SubtiBank SubtiBank
ydeJ [2019-06-07 09:00:43]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

ydeJ [2019-06-07 09:00:43]

unknown
locus
BSU05220
pI
4.58
mw
24.21 kDa
protein length
219 aa Sequence Blast
gene length
660 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]
  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    569,290 569,949

    The protein

    [SW|Localization]

  • cell membrane (according to Swiss-Prot)

    • Expression and Regulation

    Operons

    genes
    [gene|45438A54D3B3D6F1781CB86BB6E78FB088DBAF97|ydeJ]
    description
    [Pubmed|20817675]

    regulatory mechanism

  • [protein|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB]: repression, [Pubmed|20817675], in [regulon|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB regulon]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-C133 (ydeJ::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2131 NBRP B. subtilis, Japan]
  • BKE05220 ([gene|45438A54D3B3D6F1781CB86BB6E78FB088DBAF97|ydeJ]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05220 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTTTCATTCCTCTCTA, downstream forward: _UP4_TAATCAGTATTCGTTTGTCT
  • BKK05220 ([gene|45438A54D3B3D6F1781CB86BB6E78FB088DBAF97|ydeJ]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05220 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTTTCATTCCTCTCTA, downstream forward: _UP4_TAATCAGTATTCGTTTGTCT

    • References

  • 20817675